References to heart modelling

Crampin, E.J., Halstead, M., Hunter, P.J., Nielsen, P., Noble, D., Smith, N. & Tawhai, M. (2004): Computational Physiology and the Physiome Project, Experimental Physiology, 89(1), pp. 1-26.
Feytmans, E., Noble, D. & Peitsch, M. (2005): Genome size and numbers of biological functions, Transactions on Computational Systems Biology, 1, pp. 44-49.
Fink, M., Noble, D. & Giles, W. (2005): Contributions of inwardly-rectifying K+ currents to repolarization assessed using mathematical models of ventricular myocytes, Philosophical Transactions of the Royal Society, pp. in press.
Garny, A., Noble, D. & Kohl, P. (2005): Dimensionality in cardiac modelling, Progress in Biophysics and Molecular Biology, 87, pp. 47-66.
Hinch, R., Lindsay, K., Noble, D. & Rosenberg, J. (2005): The effects of static magnetic field on action potential propagation and excitation recovery in nerve, Progress in Biophysics and Molecular Biology, 87, pp. 321-328.
Lei, M., Jones, S., Liu, J., Lancaster, M., Fung, S., Dobrzynski, H., Camelitti, P., Maier, S.K.G., Noble, D. & Boyett, M.R. (2004): Requirement of Neuronal and Cardiac-type Sodium Channels for Murine Sinoatrial node Pacemaking, Journal of Physiology, 559, pp. 835-848.
McVeigh, A., Allen, J.I., Moore, M.N., Dyke, P. & Noble, D. (2004): A carbon and nitrogen flux model of mussel digestive gland epithelial cells and their simulated response to pollutants, Marine Environmental Research, 58, pp. 821-827.
Moore, M.N. & Noble, D. (2004): Editorial: Computational modelling of cell and tissue processes and function, Journal of Molecular Histology, 35, pp. 655-658.
Noble, D. (2004): Modeling the Heart, Physiology, 19, pp. 191-197.
Noble, D. (2005): Commentary: Physiology is the Logic of Life, Japanese Journal of Physiology, 54, pp. 509-520.
Noble, D. (2005): The heart is already working, Biochemical Society Transactions, pp. in press.
Noble, D. (2005): Multilevel modelling in systems biology: from cells to whole organs Systems modelling in cellular biology (Cambridge Mass, MIT Press).
Noble, D. (2005): The role of computational biology, The Biochemist, pp. in press.
Noble, D. (2005): Systems Biology and the Heart, Biosystems, pp. in press.
Noble, D. (2005): Systems Biology of the Heart, in: R. Winslow (Ed)) Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Chichester, Wiley).
Roux, E., Noble, P.J., Noble, D. & Marhl, M. (2005): Modelling of calcium handling in airway myocytes, Progress in Biophysics and Molecular Biology, pp. in press.
Ten Tusscher, K.H.W.J., Noble, D., Noble, P.J. & Panfilov, A.V. (2004): A model of the human ventricular myocyte, American Journal of Physiology, 286(4), pp. H1573-1589.
Garny AF & Kohl P.: Mechanical induction of arrhythmias during ventricular repolarisation: modelling cellular mechanisms and their interaction in 2D. Ann NY Acad Sci 2004; 1015: 133-143.
Camelliti P, Green CR, LeGrice I & Kohl P.: Fibroblast network in rabbit sino-atrial node: structural and functional identification of homo- and heterologous cell coupling. Circulation Research 2004; 94: 828-835.
Camelliti P, Devlin G, Matthews KG, Kohl P & Green CR.: Spatially and temporally distinct expression of fibroblast connexins after sheep ventricular infarction. Cardiovascular Research 2004; 62: 415-425.
Trayanova N, Li W, Eason J & Kohl P.: The effect of stretch-activated channels on defibrillation efficacy: a simulation study. Heart Rhythm 2004; 1: 67-77.
Solovyova OE, Vikulova NA, Konovalov PV, Kohl P & Markhasin VS.: Mathematical modelling of mechano-electric feedback in cardiomyocytes. Russian Journal of Numerical Analysis and Mathematical Modelling 2004; 19: 331-351.
Kohl P.: Cardiac cellular heterogeneity and remodelling. Cardiovascular Research 2004/64:195-197.
Li W, Kohl P & Trayanova N.: Induction of ventricular arrhythmias following a mechanical impact: a simulation study in 3D. Journal of Molecular Histology 2004/35:679-686.
King AM, Loisell DS & Kohl P.: Force generation for locomotion of vertebrates: skeletal muscle overview. IEEE 2004/29:684-691.
Camelliti P, Borg T & Kohl P.: Structural and functional characterization of cardiac fibroblasts. Cardiovascular Research 2005/65:40-51.
Camelliti P, McCulloch AD & Kohl P.: Micro-structured co-cultures of cardiac myocytes and fibroblasts: a two-dimensional in vitro model of cardiac tissue. Microscopy and Microanalysis 2005 (in press).
Cooper PJ & Kohl P.: Species- and preparation-dependence of stretch effects on sino-atrial node pacemaking. Ann NY Acad Sci 2005; (in press).
Moskvin AS, Philipiev MP, Solovyova OE, Kohl P & Markhasin VS.: Electron-conformational model of RyR lattice dynamics. Progress in Biophysics and Molecular Biology 2005 (in press).
Cooper PJ, MacLeod IA, Schaaf STM, Epstein A, Boulin C & Kohl P.: Soft tissue impact characterisation for isolated heart experimental modelling of Commotio cordis and pre-cordial thump. Progress in Biophysics and Molecular Biology 2005 (in press).
Protsenko YL, Routkevich SM, Guriev VY, Katsnelson LB, Solovyova OE, Lookin, ON, Balakin AA, Kohl P & Markhasin VS.: Hybrid duplex – a novel method to study the contractile function of heterogeneous myocardium. Pflügers Archiv (submitted).
Solovyova O, Katsnelson L, Kohl P, Konovalov P, Lookin O, Moskvin A, Protsenko Yu, Vikulova N & Markhasin VS.: Activation sequence as a key mechanism of functional self-organization of myocardium. Phil Trans R Soc Lond A 2005 (submitted).
Camelliti P & Kohl P.: Interrelation of cardiac fibroblasts and myocytes: new tools and insights. Microscopy and Microanalysis 2004/10:1398-1399.
Garny A, Hunter PJ, Noble D, Boyett MR & Kohl P.: Rabbit sino-atrial node modeling: from single cell to tissue structure. Proceedings of the 25th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 2003: 28-31.
Garny A & Kohl P.: Cardiac research at the interface of engineering and computing. The Chemical Engineer, 2004 (September):31-32.
Kohl P, Sachs F & Franz MR.: Cardiac mechano-electric feedback: from pipette to patient. In: Kohl P, Sachs F & Franz MR (eds) Cardiac mechano-electric feedback and arrhythmias: from pipette to patient. Saunders (Elsevier) 2005.
Cooper PJ & Kohl P.: Mechanical modulation of sino-atrial node pacemaking. In: Kohl P, Sachs F & Franz MR (eds) Cardiac mechano-electric feedback and arrhythmias: from pipette to patient. Saunders (Elsevier) 2005.
Kohl P, King AM & Boulin C.: Anti-arrhythmic effects of acute mechanical stimulation. In: Kohl P, Sachs F & Franz MR (eds) Cardiac mechano-electric feedback and arrhythmias: from pipette to patient. Saunders (Elsevier) 2005.
Franz MR, Sachs F & Kohl P.: Mechano-electric feedback: new directions, new tools. In: Kohl P, Sachs F & Franz MR (eds) Cardiac mechano-electric feedback and arrhythmias: from pipette to patient. Saunders (Elsevier) 2005.
Kohl P, King AM & Boulin C.: Anti-arrhythmic effects of acute mechanical stimulation. Resuscitation Council (UK) Newsletter 2005.
Bourn, D.W., Maleckar, M.M., Rodriguez, B., Trayanova, N.: Mechanistic insight into the increase in the upper limit of vulnerability for rapid pacing. Submitted to Philosophical Transactions of the Royal Society Series A, 2005
Garny, A., Kohl, P.: Mechanically-induced arrhythmia in a 2D model of ventricular repolarisation. NASPE, 2004
Kohl, P., Garny, A., Trayanova, N.: (How) do computer models help us to understand arrhythmias? J Mol Cell Cardiol 36/5: 740, 2004
Kohl, P., Garny, A., Noble, D.: What have we learned from modelling of cardiac mechano-electric feedback? Russ Physiol Soc, 2004
Garny, A., Kohl, P.: Mechanical termination of re-entrant excitation in a 2D ventricular tissue model. Physiol., 2004
Coveney, P.V., De Fabritiis, G., Harvey, M., Pickles, S., Porter, A.: Coupled models on distributed resources. To be submitted to Comm. Phys. Comm., 2006
Serrano, M., De Fabritiis, G., Espanol, P., Coveney, P.: A stochastic Trotter integration scheme for dissipative particle dynamics. Submitted to Elsevier Science, 2005
Kohl, P., Bollensdorff, C., Garny, A.: Mechano-sensitive ion channels in the heart: experimental and theoretical models. Exp Physiol Trans Int 91: 307-321
Cooper, J., McKeever, S., Garny, A.: On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations. Partial Evaluation and Program Manipulation: 12-20, 2006
Trénor, B., Ferrero, J.M. Jr., Rodríguez, B., Montilla, F.: Effect of pinacidil on reentrant arrhythmias generated during acute myocardial ischemia. Annals Biom Eng, 33(7):897-906, 2005
Jie, X., Rodríguez, B., Blake, R., deGroot, J., Coronel, R., Trayanova, N.: Reentry in surviving epicardium coupled to depolarized midmyocardial tissue: a simulation of arrhythmogenesis during phase 1B. Heart Rhythm 2006
Tice, B., Rodríguez, B., Trayanova, N.: Arrthythmogenicity of transmural heterogeneities in a realistic model of regional ischemia. Heart Rhythm, 2(5):S261, 2005
Maleckar, M.M., Bourn, D.W., Rodríguez, B., Trayanova, N.: Mechanistic insight into the increase in the upper limit of vulnerability to electric shocks following rapid pacing. Heart Rhythm, 2(5):S219, 2005
Trayanova, N., Tice, B., Rodriguez, B.: Arrhythmogenesis in regional ischemia: insights from computer simulations. The Physiological Society Meeting, Oxford, UK, October 2004
Jie, X., Rodríguez, B., Trayanova, N.: The ischemic heart: what causes ectopic beating. XXVII International Conference of the IEEE/EMBS, 2005
Jie, X., Rodriguez, B., Trayanova, N.: Role of cellular uncoupling in ischemia-related cardiac arrhythmias. XXVIII International Conference of the IEEE/EMBS, 2006
Trayanova, N., Plank, G., Rodríguez, B.: What have we learned from mathematical models of defibrillation and postshock arrhythmogenesis? Application of bidomain simulations. Heart Rhythm 2006

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